species:   Fugra
pid:       PID0980
parent:    FgmilR-7dps-83
paralog:   
locus:     NC_026477.1:2777083-2777147
matures:   ['UGAGGACAUUCUGCGCAUAUGCC', 'UUUGUGUCCAGGAUUCUAAUCUUG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026477.1:2777083-2777147

2 out of bounds
7 alignments
6 proper strand
6 stranded perfect matches

  *************************          **************************  
GCCUUGAGGACAUUCUGCGCAUAUGCCAAAGUCUCUUCCUUUGUGUCCAGGAUUCUAAUCUUGGC
(((..(((((.((((((.(((((..................))))).)))))))))..))..)))
----UGAGGACAUUCUGCGCAUAUGCC-------------------------------------- l=23 a=3 c
---------------------------------------UUUGUGUCCAGGAUUCUAAUCUUG-- l=24 a=0 c*
----UGAGGACAUUCUGCGCAUAUGCC-------------------------------------- l=23 a=3 ma
---------------------------------------UUUGUGUCCAGGAUUCUAAUCUUG-- l=24 a=0 ma*

----UGAGGACAUUCUGCGCAUAUGC--------------------------------------- l=22 a=2 
----UGAGGACAUUCUGCGCAUAUGCC-------------------------------------- l=23 a=3 (c,ma)
----UGAGGACAUUCUGCGCAUAUGCCAA------------------------------------ l=25 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101110
fn-111
